afni.nimh.nih.gov
AFNI Message Board
Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| January 08, 2014 10:53AM | |
Script:
3dGroupInCorr -npb 2 \
-setA sic.pre.grpincorr.niml \
-setB sic.post.grpincorr.niml
-labelA pre -labelB post \
-center SAME -donocov -seedrad 5
Terminal Output:
3dGroupInCorr: AFNI version=AFNI_2011_12_21_1014 (Oct 30 2013) [64-bit]
++ Authored by: Cox, the Mad Correlator
++ GIC: data file sic.pre.grpincorr.data found with 9,507,400 bytes of data
++ GIC: -setA opened, contains 1 datasets, 95074 time series, 9,507,400 bytes
++ GIC: data file sic.post.grpincorr.data found with 9,507,400 bytes of data
++ GIC: -setB opened, contains 1 datasets, 95074 time series, 9,507,400 bytes
++ GIC: page faulting (reading) data into memory
+ setA:0123456789.0123456789.0123456789.0123456789.0123456789.!
+ setB:0123456789.0123456789.0123456789.0123456789.0123456789.!
++ GIC: total bytes input = 19,014,800 (about 19 million [mega])
++ GIC: --- Be sure to start AFNI with the '-niml' command line option
+ --- [or press the NIML+PO button if you forgot '-niml']
++ Opening NIML socket 'tcp:localhost:1072' to AFNI. Connected!
++ 3dGroupInCorr stands ready to do thy bidding, O Master
!!
+ GIC: OpenMP thread count = 4
I am running the afni command "afni -niml -npb 2" first and then running the script above. I assume it is working since the output is giving me positive feedback but when I try the dropdown menu it tells me that GrpInCorr is not ready/not connected.
Thoughts?
3dGroupInCorr -npb 2 \
-setA sic.pre.grpincorr.niml \
-setB sic.post.grpincorr.niml
-labelA pre -labelB post \
-center SAME -donocov -seedrad 5
Terminal Output:
3dGroupInCorr: AFNI version=AFNI_2011_12_21_1014 (Oct 30 2013) [64-bit]
++ Authored by: Cox, the Mad Correlator
++ GIC: data file sic.pre.grpincorr.data found with 9,507,400 bytes of data
++ GIC: -setA opened, contains 1 datasets, 95074 time series, 9,507,400 bytes
++ GIC: data file sic.post.grpincorr.data found with 9,507,400 bytes of data
++ GIC: -setB opened, contains 1 datasets, 95074 time series, 9,507,400 bytes
++ GIC: page faulting (reading) data into memory
+ setA:0123456789.0123456789.0123456789.0123456789.0123456789.!
+ setB:0123456789.0123456789.0123456789.0123456789.0123456789.!
++ GIC: total bytes input = 19,014,800 (about 19 million [mega])
++ GIC: --- Be sure to start AFNI with the '-niml' command line option
+ --- [or press the NIML+PO button if you forgot '-niml']
++ Opening NIML socket 'tcp:localhost:1072' to AFNI. Connected!
++ 3dGroupInCorr stands ready to do thy bidding, O Master
!!
+ GIC: OpenMP thread count = 4
I am running the afni command "afni -niml -npb 2" first and then running the script above. I assume it is working since the output is giving me positive feedback but when I try the dropdown menu it tells me that GrpInCorr is not ready/not connected.
Thoughts?
| Subject | Author | Posted |
|---|---|---|
|
cfrum | January 08, 2014 10:53AM |
|
ziad | January 08, 2014 11:55AM |
|
cfrum | January 08, 2014 01:11PM |
|
ziad | January 08, 2014 03:32PM |
|
ziad | January 08, 2014 08:01PM |
|
cfrum | January 09, 2014 12:02PM |
