AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ziad
January 29, 2014 09:43AM
That should not be the case, though we should start by defining what you mean by native space. The -GIFTI option should result in a volume that is in the same space as what you passed to FreeSurfer. If that is not the case then I will need to take a look at the case you have. For that I would need you to send me the output of the FreeSurfer run for that subject. If you want to try this route send me an email and we can take it from there.
The other option is to run @SUMA_AlignToEperiment to bring whatever is in the SUMA directory into alignment with any other version of that same subject's anatomy.

cheers,
Ziad
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Subject Author Posted

Freesurfer to SUMA to Native

_durai_ January 28, 2014 05:14PM

Re: Freesurfer to SUMA to Native

ziad January 28, 2014 06:02PM

Re: Freesurfer to SUMA to Native

_durai_ January 28, 2014 09:11PM

Re: Freesurfer to SUMA to Native

ziad January 29, 2014 09:43AM