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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ziad

February 19, 2014 08:38PM

Moderator
Registered: 11 years ago
Posts: 410

Hi Kara,

I think you're still not using the standard mesh surfaces in the afni_proc.py command. What is the exact afni_proc.py command you used to process the data on the surface? The -surf_spec option should be specifying one of the standard mesh spec files, not the original ones. So for example, you'll need to use
-surf_spec std.120.YOUR_SUBJECT_ID_lh.spec
instead of
-surf YOUR_SUBJECT_ID_lh.spec

You should do this for all your subjects and the results should all come out on the same grid, ready to go to 3dttest++.

So if you did not use standard mesh surfaces for the afni_proc.py, you'll need to rerun the analysis for each of the subjects then go to the group level without having to use ConvertDset.

cheers,
Ziad

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Subject	Author	Posted
when and how to use standard meshes in SUMA	kblacker	February 13, 2014 10:13AM
Re: when and how to use standard meshes in SUMA	nick	February 13, 2014 10:54AM
Re: ConvertDsets error	kblacker	February 15, 2014 11:23AM
Re: ConvertDsets error	nick	February 15, 2014 01:03PM
Re: ConvertDsets error	kblacker	February 17, 2014 09:37AM
Re: ConvertDsets error	nick	February 17, 2014 10:49AM
Re: when and how to use standard meshes in SUMA	ziad	February 15, 2014 05:58PM
Re: when and how to use standard meshes in SUMA	kblacker	February 17, 2014 09:41AM
Re: when and how to use standard meshes in SUMA	kblacker	February 18, 2014 01:30PM
Re: when and how to use standard meshes in SUMA	ziad	February 19, 2014 08:38PM
Re: when and how to use standard meshes in SUMA	kblacker	February 20, 2014 10:50AM
Re: when and how to use standard meshes in SUMA	rick reynolds	February 20, 2014 11:05AM
Re: when and how to use standard meshes in SUMA	ziad	February 20, 2014 11:28AM