AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Linda
April 02, 2014 10:12AM
For anatomical data: I get the result from the freesurfer and translate the result by using @SUMA_Make_Spec_FS and then MapIcosahedron.
For functional data: I do the correlation between two condition (different eye watching the same stimulate) within each subject . And then align each subject's the correlation result to the T1.nii (getting from freesurfer) by using 3dAllineate.

1 If I need to do @SUMA_AlignToExperiment next for anatomical for surface? I am a little confuse about the different between
MapIcosahedron and @SUMA_AlignToExperiment.

2 If I need to align the correlation result to the freesurfer's by using 3dvol2surf next? For the raw functional data, it need to align the functional data to anatomical data by using 3dvol2surf. But for me, the functional result has align to the T1.nii properly by using 3dAllineate. So I am not sure what to do next. Or I just not to align the correlation result by using 3dAllineate but directly use the 3dvol2surf.
Thanks very much!
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Subject Author Posted

Do I need to do 3dvol2surf at this situation by using SUMA?

Linda April 02, 2014 10:12AM

Re: Do I need to do 3dvol2surf at this situation by using SUMA?

ziad April 02, 2014 11:07AM

Re: Do I need to do 3dvol2surf at this situation by using SUMA?

Linda April 02, 2014 11:21AM

Re: Do I need to do 3dvol2surf at this situation by using SUMA?

nick April 02, 2014 11:31AM

Re: Do I need to do 3dvol2surf at this situation by using SUMA?

Linda April 02, 2014 11:44AM

Re: Do I need to do 3dvol2surf at this situation by using SUMA?

nick April 02, 2014 12:01PM