AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 08, 2014 12:49PM
Hi Gang,

I code the vectors as a time series of 1s and 0s and then let 3dDeconvolve figure out the IRESP via min and maxlag. I do not preconvolve the vectors.

I like the idea of 3dMEMA, but I don't see an example where I could test for a linear trend in my 3 conditions. I would normally use 3dRegAna coding the three conditions with 1, 2, and 3. I don't see an equivalent way to do this in 3dMEMA. The closest thing I found was Example 3, below.

3dMEMA: Example 3 --- Paired type (difference of two regression coefficients or
general linear contrasts from each subject in a group). One scenario of
general linear combinations is to test linear or higher order trend at
individual level, and then take the trend information to group level.

In this case, I would test the linear trend with a glt within 3dDeconvolve and then use 3dMEMA to do a simple t-test of that beta vs. zero. Does that sound right? But would the beta and t-value associated with the glt reflect the fact that some subjects may have fewer trials than others for one of the three conditions tested with the glt?

Or is there a way to do a linear test within 3dMEMA on the betas and their t-values?

Christine
Subject Author Posted

correlating a waveform with fmri signal

Christine Smith April 07, 2014 08:23PM

Re: correlating a waveform with fmri signal

gang April 08, 2014 10:44AM

Re: correlating a waveform with fmri signal

Christine Smith April 08, 2014 12:49PM

Re: correlating a waveform with fmri signal

gang April 08, 2014 03:40PM

Re: correlating a waveform with fmri signal

Christine Smith April 08, 2014 05:40PM

Re: correlating a waveform with fmri signal

Christine Smith April 08, 2014 05:50PM

Re: correlating a waveform with fmri signal

gang April 08, 2014 06:05PM

Re: correlating a waveform with fmri signal

Christine Smith April 08, 2014 09:24PM

Re: correlating a waveform with fmri signal

gang April 09, 2014 12:02PM

Re: correlating a waveform with fmri signal

Christine Smith April 09, 2014 01:08PM

Re: correlating a waveform with fmri signal

gang April 09, 2014 03:29PM

Re: correlating a waveform with fmri signal

Christine Smith April 09, 2014 03:49PM