Hi Ziad & Rick,
Thanks for your responses.
Ziad: when I run with the -GIFTI switch I get an "invalid option" error; they must have an old version of
AFNI running; I'll have to get the server admin to update to newer binaries
Rick: I don't see a copy of MusicCog_AER_SurfVol+orig located anywhere. I don't think the script got that
far. I was just running these commands directly after running FreeSurfer's recon-all.
Will post again when I get in touch with the server admin.
Thanks guys,
Adam