History of AFNI updates  

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September 05, 2014 09:06AM
Hi Tim,

You should be able to remove the 'tlrc' block,
and -tlrc options (you have -tlrc_base). Then
remove the "+orig" from your -copy_anat dataset,
i.e. use: -copy_anat $subject-$phase-t1mprage .

On a separate topic, are you sure about using
-regress_censor_motion 3.0? That is a per-TR
motion limit, making it pretty high. The outlier
censoring should mitigate that, though.

- rick
Subject Author Posted

Aligning epi to anat in afni_proc.py when anat is tlrc'd

TimMeeker September 04, 2014 04:43PM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

rick reynolds September 05, 2014 09:06AM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

TimMeeker September 05, 2014 01:10PM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

TimMeeker September 05, 2014 05:38PM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

rick reynolds September 05, 2014 09:33PM