AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
September 05, 2014 09:06AM
Hi Tim,

You should be able to remove the 'tlrc' block,
and -tlrc options (you have -tlrc_base). Then
remove the "+orig" from your -copy_anat dataset,
i.e. use: -copy_anat $subject-$phase-t1mprage .

On a separate topic, are you sure about using
-regress_censor_motion 3.0? That is a per-TR
motion limit, making it pretty high. The outlier
censoring should mitigate that, though.

- rick
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Subject Author Posted

Aligning epi to anat in afni_proc.py when anat is tlrc'd

TimMeeker September 04, 2014 04:43PM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

rick reynolds September 05, 2014 09:06AM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

TimMeeker September 05, 2014 01:10PM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

TimMeeker September 05, 2014 05:38PM

Re: Aligning epi to anat in afni_proc.py when anat is tlrc'd

rick reynolds September 05, 2014 09:33PM