AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 16, 2015 02:16PM
Hi Paul,

To visualize my tract (basolateral amygdala to vmPFC, with the centromedial amygdala as an exclusion mask, I used the following:
$ suma -vol PAIRMAP_NAME[0] -gdset o.PR_000.niml.dset -vol FA_FILE

However, I ran into the following error: Error SUMA_LoadDsetOntoSO_eng (SUMA_Color.c:10118):
Could not find network_file "o.PR_000.niml.tract" on disk for dset

The o.PR_000.niml.tract was not created. Also, I did use the -dump_rois AFNI and I did NOT have a NET_000_ROI_001_002+orig. created. I see that I have created a NET_000_ROI_001_001+orig and NET_000_ROI_002_002+orig.

Any thoughts on what I might be missing and why these files are not being created!

Thanks for responding so throughly and timely to my questions! Much appreciated!

Emily
Subject Author Posted

Diffusion Tensor Imaging Analysis Questions

Emily December 04, 2014 12:24PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 05, 2014 02:24AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily December 16, 2014 02:20PM

Re: Diffusion Tensor Imaging Analysis Questions

Peter Molfese December 16, 2014 02:40PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily December 22, 2014 01:02PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 22, 2014 02:39PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 22, 2014 02:33PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily December 22, 2014 03:53PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 22, 2014 04:32PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 04, 2015 03:37PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 04, 2015 03:49PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 05, 2015 05:30PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 06, 2015 03:26AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 16, 2015 02:16PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 16, 2015 04:51PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 17, 2015 05:28PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 18, 2015 02:49AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 19, 2015 04:03PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 20, 2015 02:05AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 25, 2015 01:30PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 25, 2015 04:22PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 25, 2015 05:03PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 26, 2015 02:10AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 27, 2015 10:57AM