AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 25, 2015 04:22PM
Right, ok, so you are viewing: slices of the FA map, and the representation of your '-gdset SET' is the yellow sphere+labels+connecting line (the color of the line is the matrix element value being represented).

The volumes showing the single connection (what was some long file pathway ending in 'NET_000_ROI_001_002+orig' in your previous message), is probably not visible because it is being shown as a slice by default, and not as a volume (same as your FA map). To view the volume: go to 'View' -> 'Object Controller'. When the controller opens, in the top row you see some buttons like 'Close' and 'BHelp'. Now, if you see one next to that called 'All Objs', life is a lot easier-- this is a feature available in recent AFNI builds that allows you to toggle through all your input data sets easily, and makes life much easier. In fact, I woudl recommend that you update your AFNI version to be able to have this. (Otherwise, selecting slice data is trickier.) I will assume that you have this feature... (it really does help things a lot.)

Click that button, and then you can click on the up/down arrows just to the right along the top to toggle through all the files you entered. Use the arrows to get to the filename that you want to see as volumes. Then on the left side fo the controller, near the bottom, is a section called 'Volume Rendering Controls'. Click the box next to the 'v' there (which will turn on the 'volume' viewer). Now, you should see volumes appear in the main viewer.

This and some more related information are also available online, as a growing help set for SUMA, FATCAT, and (to be) AFNI. See the announcement and links here:
[afni.nimh.nih.gov]

--pt
Subject Author Posted

Diffusion Tensor Imaging Analysis Questions

Emily December 04, 2014 12:24PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 05, 2014 02:24AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily December 16, 2014 02:20PM

Re: Diffusion Tensor Imaging Analysis Questions

Peter Molfese December 16, 2014 02:40PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily December 22, 2014 01:02PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 22, 2014 02:39PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 22, 2014 02:33PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily December 22, 2014 03:53PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor December 22, 2014 04:32PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 04, 2015 03:37PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 04, 2015 03:49PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 05, 2015 05:30PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 06, 2015 03:26AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 16, 2015 02:16PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 16, 2015 04:51PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 17, 2015 05:28PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 18, 2015 02:49AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 19, 2015 04:03PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 20, 2015 02:05AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 25, 2015 01:30PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 25, 2015 04:22PM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 25, 2015 05:03PM

Re: Diffusion Tensor Imaging Analysis Questions

ptaylor January 26, 2015 02:10AM

Re: Diffusion Tensor Imaging Analysis Questions

Emily January 27, 2015 10:57AM