AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
Juan
January 11, 2015 10:03PM
Hi, Experts,

I attempted to run a meica.py as below, however, it gave me an error alarm "FATAL ERROR: can't open dataset R1+orig[0]". I could not figure out the problem. I see that the problem happened because of my "--align_base" setting. My understanding was that the reference volume should be closest to the anatomical scanning, so I used [0]. Even I remove the [0], the script still reported the same alarm.


meica.py -d "run1.e0[1,2,3].nii" -a ../mprage/mprage_scan_1+orig.BRIK -e 15,28,42 -b 10 --tlrc=TT_N27+tlrc --align_base=R1+orig'[0]' --tpattern=alt+z --prefix=Tep_run1

Thanks so much for any advice.

Juan
Reply Quote
RSS
Subject Author Posted

FATAL ERROR: can't open dataset R1+orig[0]

Juan January 11, 2015 10:03PM

Re: FATAL ERROR: can't open dataset R1+orig[0]

Juan January 11, 2015 10:10PM

Re: FATAL ERROR: can't open dataset R1+orig[0]

rick reynolds January 13, 2015 03:47PM

Re: FATAL ERROR: can't open dataset R1+orig[0]

Juan January 16, 2015 04:08PM