Peter,
Thanks very much! The -bigmove is really what I needed to get it going. Btw, it did report an error while doing all this:
...
#Script is running (command trimmed):
3dNotes -h "align_epi_anat.py -anat ../MPRAGEco.nii.gz -epi_base 0 -epi \
../Imagination.nii.gz -epi2anat -big_move -master_epi ../MPRAGEco.nii.gz" \
./Imagination_al
Error: Cannot open dataset
# Not sure what 3dNotes does.
I will now investigate the output and see if I need to make changes to my commands.
Many thanks again!
Best wishes,
Ranjan
