Welcome! Log In Create A New Profile

AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates

Previous Message Next Message

Message List New Topic Print View

maitra

April 02, 2015 11:05PM

Registered: 9 years ago
Posts: 146

Thanks very much again, Rick!

Here is where I am lost.

The original anatomical dataset is: 110 x 208 x 202, the functional is 64x64x30, with different FOVs (as specified in the file headers).

However, the datasets that come out in the functional (epi) after alignment and processing are: 46 x 55 x 43. The anatomic is: 161 191 151. So I am confused as to where the aligned anatomic image (that would match or contain the functional image areas) is. Is there an easy way to extract the anatomic to match the 46x55x43 epi dataset summaries from here?

Please let me know if my question is not clear and I will try to ask my question again.

Many thanks and best wishes,
Ranjan

Reply Quote

RSS

Subject	Author	Posted
is it better to use align_epi_anat.py or use alignment within afni_proc.py?	maitra	March 31, 2015 01:43PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	rick reynolds	March 31, 2015 09:47PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	maitra	April 02, 2015 06:28PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	rick reynolds	April 02, 2015 09:17PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	maitra	April 02, 2015 11:05PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	maitra	April 03, 2015 04:28PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	Isaac Schwabacher	April 03, 2015 04:44PM
Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?	rick reynolds	April 07, 2015 08:58AM