AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 02, 2015 09:17PM
The default (in uber_subject.py) is to align the EPI:
1. to an EPI base
2. to the anat (inverse of anat to EPI base)
3. to the template (via anat->template xform)

These transformations are catenated and applied
at once, as align_epi_anat.py might do.

Because the EPI gets aligned to the anat, the only
transformation applied to anat_final is to standard
space. Yet everything is aligned at the end.

- rick
Subject Author Posted

is it better to use align_epi_anat.py or use alignment within afni_proc.py?

maitra March 31, 2015 01:43PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

rick reynolds March 31, 2015 09:47PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

maitra April 02, 2015 06:28PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

rick reynolds April 02, 2015 09:17PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

maitra April 02, 2015 11:05PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

maitra April 03, 2015 04:28PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

Isaac Schwabacher April 03, 2015 04:44PM

Re: is it better to use align_epi_anat.py or use alignment within afni_proc.py?

rick reynolds April 07, 2015 08:58AM