afni.nimh.nih.gov

The default (in uber_subject.py) is to align the EPI:
1. to an EPI base
2. to the anat (inverse of anat to EPI base)
3. to the template (via anat->template xform)

These transformations are catenated and applied
at once, as align_epi_anat.py might do.

Because the EPI gets aligned to the anat, the only
transformation applied to anat_final is to standard
space. Yet everything is aligned at the end.

- rick