AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 13, 2015 03:55PM
Hello,

I am using 3dBlurtoFWHM for the first time and can run it successfully without a mask. I tried to add a mask and it still looks like it is blurring the entire brain. The instructions for the program state that voxels NOT in the mask will be set to zero in the output.

Is there something wrong with this command line?
3dBlurToFWHM -input decon+tlrc -FWHM 4 -mask lhip2mm+tlrc -quiet -prefix decon_smart_real4mmblur+tlrc

Best,
Christine
Subject Author Posted

3dBlurtoFWHM

Christine Smith May 13, 2015 03:55PM

Re: 3dBlurtoFWHM

rick reynolds May 13, 2015 04:24PM

Re: 3dBlurtoFWHM

Christine Smith May 13, 2015 05:33PM

Re: 3dBlurtoFWHM

Christine Smith May 14, 2015 07:59PM

Re: 3dBlurtoFWHM

jkeidel May 15, 2015 06:10AM

Re: 3dBlurtoFWHM

Christine Smith May 15, 2015 11:29AM

Re: 3dBlurtoFWHM

jkeidel May 15, 2015 11:43AM

Re: 3dBlurtoFWHM

rick reynolds May 15, 2015 12:29PM