AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 03, 2015 10:40AM
Hi Kristin,

The GAM basis function is intended to be for a
short event (around 1 second, or less). Since
your events are all at least 3 seconds, GAM is
not really accurate enough.

One basic question is whether you want to actually
compare the betas across classes (e.g. contrast
cue vs. anticipatin or stimulation).

Assuming so, consider:
cue: BLOCK(3)
anticipation: AM1 and dmBLOCK
stimulation: BLOCK(6)

Note that using BLOCK(3,1) or BLOCK(6,1) would
make the comparison across classes biased toward
the longer events (stimulation).

To apply this in afni_proc.py, consider:

-regress_stim_times cue_times.txt ant_times.txt stim_times.txt \
-regress_stim_labels cue ant stim      \
-regress_stim_types times AM1 times    \
-regrsss_basis_many 'BLOCK(3)' dmBLOCK \

- rick
Subject Author Posted

correct handling of variable event durations in afni_proc.py

KristinBH June 02, 2015 10:36AM

Re: correct handling of variable event durations in afni_proc.py

rick reynolds June 03, 2015 10:40AM

Re: correct handling of variable event durations in afni_proc.py

KristinBH June 03, 2015 12:50PM

Re: correct handling of variable event durations in afni_proc.py

KristinBH June 07, 2015 04:22PM

Re: correct handling of variable event durations in afni_proc.py

rick reynolds June 07, 2015 09:03PM

Re: correct handling of variable event durations in afni_proc.py

rick reynolds June 09, 2015 04:25PM