AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 23, 2015 10:23AM
Hi,

I'm a little bit confused about what the exact commands and names fo the files are-- rather than retyping, in which things (spelling, options, etc.) can change, copying&pasting the exact commands would be preferred.

If you just want to view the *.gii surface with the *.niml.tract file simultaneously, that can be done using a single command with SUMA:
$ suma -i anat.gii -tract L_pL_000.niml.tract

and then you hit the '.' (=period/fullstop) key to toggle the surface on/off (while the mouse cursor is over the SUMA display window).

The '-i SURFACE_FILE' loads a surface and the '-tract TRACT_FILE' loads a tract file. You can open the object viewer and color the surface variously as you wish. Some tract+surface examples are given here:
[afni.nimh.nih.gov]
(scrolling down that page a bit, there are some SUMA+DriveSuma examples, as well.

Does that work for you?

--pt
Subject Author Posted

DriveSuma error

MichelleK July 23, 2015 08:41AM

Re: DriveSuma error

rick reynolds July 23, 2015 08:52AM

Re: DriveSuma error

MichelleK July 23, 2015 08:58AM

Re: DriveSuma error

ptaylor July 23, 2015 09:19AM

Re: DriveSuma error

MichelleK July 23, 2015 09:46AM

Re: DriveSuma error

ptaylor July 23, 2015 10:23AM

Re: DriveSuma error

ptaylor July 23, 2015 10:24AM

Re: DriveSuma error

MichelleK July 29, 2015 10:21PM

Re: DriveSuma error

ptaylor July 30, 2015 06:10AM

Re: DriveSuma error

MichelleK July 30, 2015 09:13AM

Re: DriveSuma error

ptaylor July 30, 2015 12:01PM

Re: DriveSuma error

07lena12 May 30, 2016 12:34AM

Re: DriveSuma error

ptaylor May 30, 2016 06:19AM

Re: DriveSuma error

07lena12 May 30, 2016 08:36AM

Re: DriveSuma error

rick reynolds June 02, 2016 10:59AM