AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 30, 2016 06:19AM
Hi-

The FATCAT Demo has some examples of both of these. It's a useful thing to go through-- there is a description README*txt file and several commented scripts. To download it, run:
$ @Install_FATCAT_DEMO

For the ROI insertion, there is an example of creating surface contours from the ROIs in the file: Do_05_RUNdti_DET_tracking.tcsh. There is a loop at the bottom of the file for creating *.niml.dset files for each network (of which there are 4) in the demo set using 3dVol2Surf.

The second SUMA command in Do_06*tcsh then gives an example of visualizing this with tracts. And also, the first suma command in the same Do_06*tcsh file has an example of visualizing who brain tracts with slices of an mprage included.

Let me know how that goes.

--pt
Subject Author Posted

DriveSuma error

MichelleK July 23, 2015 08:41AM

Re: DriveSuma error

rick reynolds July 23, 2015 08:52AM

Re: DriveSuma error

MichelleK July 23, 2015 08:58AM

Re: DriveSuma error

ptaylor July 23, 2015 09:19AM

Re: DriveSuma error

MichelleK July 23, 2015 09:46AM

Re: DriveSuma error

ptaylor July 23, 2015 10:23AM

Re: DriveSuma error

ptaylor July 23, 2015 10:24AM

Re: DriveSuma error

MichelleK July 29, 2015 10:21PM

Re: DriveSuma error

ptaylor July 30, 2015 06:10AM

Re: DriveSuma error

MichelleK July 30, 2015 09:13AM

Re: DriveSuma error

ptaylor July 30, 2015 12:01PM

Re: DriveSuma error

07lena12 May 30, 2016 12:34AM

Re: DriveSuma error

ptaylor May 30, 2016 06:19AM

Re: DriveSuma error

07lena12 May 30, 2016 08:36AM

Re: DriveSuma error

rick reynolds June 02, 2016 10:59AM