AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 05, 2015 03:08PM
Hi Stephanie,

With Ziad's departure, surface-based issues will
generally be a bit slow to resolve.

I expect that 3dROIstats (written by Tom Ross) is
interpreting node indices as mask indices from
the ROImask_lh_sup_post_Sync-Async.niml.dset mask
dataset. But in theory, node indices should be
stored as such when processed by 3D* programs.

What does 3dinfo show about that mask dataset?

3dinfo ROImask_lh_sup_post_Sync-Async.niml.dset

Try running 3dROIstats using column '[1]' from
the mask dataset. Since you used -full_list in
ROIgrow, hopefully it would be appropriate.

You could even run 3dROIstats on the mask
dataset, to make sure the mask indices are being
seen correctly.

3dROIstats -mask ROImask_lh_sup_post_Sync-Async.niml.dset'[1]' \
           -mean -nzvoxels ROImask_lh_sup_post_Sync-Async.niml.dset

- rick
Subject Author Posted

suma- surface roi

Stephanie July 27, 2015 02:15PM

Re: suma- surface roi

Stephanie July 28, 2015 06:39PM

Re: suma- surface roi

nick July 29, 2015 07:14AM

Re: suma- surface roi

Stephanie July 29, 2015 09:30AM

Re: suma- surface roi

nick July 29, 2015 11:07AM

Re: suma- surface roi

Stephanie July 29, 2015 01:02PM

Re: suma- surface roi

nick July 30, 2015 06:31AM

Re: suma- surface roi

Stephanie July 30, 2015 02:25PM

Re: suma- surface roi

nick July 31, 2015 05:29AM

Re: suma- surface roi

Stephanie August 01, 2015 07:05PM

Re: suma- surface roi

nick August 03, 2015 07:47AM

Re: suma- surface roi

rick reynolds August 05, 2015 03:08PM

Re: suma- surface roi

Stephanie August 06, 2015 10:29AM

Re: suma- surface roi

rick reynolds August 06, 2015 12:31PM