History of AFNI updates  

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November 29, 2016 01:39PM
Gang Wrote:
-------------------------------------------------------
> > I get the following error message:
>
> The test index should be added:
>
> -num_glt 1 \
> -gltLabel 1 LinearTrend -gltCode 1 'condition: '
> \
>

Gang, I included those lines and still get the same error message:

Error in `[.data.frame`(dataStr, , vars[ii]) : undefined columns selected
Calls: process.LME.opts ... gl_Constr -> glfConstr -> levels -> [ -> [.data.frame
Execution halted



> > how does setting up the 1 0 -1 in 3dLME differ
> from the approach of
> > using the -gltcode contrast method? Where, 1 0
> -1, is essentially a
> > pairwise comparison between the 1st and 3rd
> level?
>
> In the LME model, the linear trend is tested for
> the *quantitative* variable as a whole in which
> the middle condition is set as an intercept. In
> contrast, the contrast test through 3dMVM only
> focuses on the first and last condition with the
> middle condition ignored. You may try both and
> check out the difference between the two
> approaches.

I see. Thanks.
Subject Author Posted

Linear contrasts using 3dMVM

Matthew_2 August 13, 2015 04:05PM

Re: Linear contrasts using 3dMVM

gang August 13, 2015 04:38PM

Re: Linear contrasts using 3dMVM

Matthew_2 August 16, 2015 04:40PM

Re: Linear contrasts using 3dMVM

gang August 17, 2015 02:48PM

Re: Linear contrasts using 3dMVM

Matthew_2 August 17, 2015 04:54PM

Re: Linear contrasts using 3dMVM

gang August 18, 2015 02:12PM

Re: Linear contrasts using 3dMVM

mrif November 21, 2016 04:28PM

Re: Linear contrasts using 3dMVM

gang November 22, 2016 03:24PM

Re: Linear contrasts using 3dMVM

mrif November 22, 2016 04:40PM

Re: Linear contrasts using 3dMVM

gang November 23, 2016 11:55AM

Re: Linear contrasts using 3dMVM

mrif November 23, 2016 05:08PM

Re: Linear contrasts using 3dMVM

gang November 25, 2016 01:52PM

Re: Linear contrasts using 3dMVM

mrif November 28, 2016 01:38PM

Re: Linear contrasts using 3dMVM

gang November 29, 2016 12:06PM

Re: Linear contrasts using 3dMVM

mrif November 29, 2016 01:39PM

Re: Linear contrasts using 3dMVM

gang November 30, 2016 03:48PM

Re: Linear contrasts using 3dMVM

mrif December 01, 2016 02:13PM