3dDeconvolve -xout -input scaled_allruns+orig -num_stimts 13 -stim_file 1 Sample_a.txt -stim_label 1 SmplTarg -stim_minlag 1 0 -stim_maxlag 1 3 -stim_nptr 1 1 -stim_file 2 nTAR1_a.txt -stim_label 2 NewTar1 -stim_minlag 2 0 -stim_maxlag 2 3 -stim_nptr 2 1 -stim_file 3 nTAR2_a.txt -stim_label 3 NewTar2 -stim_minlag 3 0 -stim_maxlag 3 3 -stim_nptr 3 1 -stim_file 4 nTAR3_a.txt -stim_label 4 NewTar3 -stim_minlag 4 0 -stim_maxlag 4 3 -stim_nptr 4 1 -stim_file 5 sTAR1_a.txt -stim_label 5 StdTar1 -stim_minlag 5 0 -stim_maxlag 5 3 -stim_nptr 5 1 -stim_file 6 sTAR2_a.txt -stim_label 6 StdTar2 -stim_minlag 6 0 -stim_maxlag 6 3 -stim_nptr 6 1 -stim_file 7 sTAR3_a.txt -stim_label 7 StdTar3 -stim_minlag 7 0 -stim_maxlag 7 3 -stim_nptr 7 1 -stim_file 8 nDIS1_a.txt -stim_label 8 NewDis1 -stim_minlag 8 0 -stim_maxlag 8 3 -stim_nptr 8 1 -stim_file 9 nDIS2_a.txt -stim_label 9 NewDis2 -stim_minlag 9 0 -stim_maxlag 9 3 -stim_nptr 9 1 -stim_file 10 nDIS3_a.txt -stim_label 10 NewDis3 -stim_minlag 10 0 -stim_maxlag 10 3 -stim_nptr 10 1 -stim_file 11 sDIS1_a.txt -stim_label 11 StdDis1 -stim_minlag 11 0 -stim_maxlag 11 3 -stim_nptr 11 1 -stim_file 12 sDIS2_a.txt -stim_label 12 StdDis2 -stim_minlag 12 0 -stim_maxlag 12 3 -stim_nptr 12 1 -stim_file 13 sDIS3_a.txt -stim_label 13 StdDis3 -stim_minlag 13 0 -stim_maxlag 13 3 -stim_nptr 13 1 -full_first -fout -tout -concat runs4.txt -polort 2 -iresp 1 Sampletarg_lag4_percent -iresp 2 Newtarg_1_lag4_percent -iresp 3 Newtarg_2_lag4_percent -iresp 4 Newtarg_3_lag4_percent -iresp 5 Stdtarg_1_lag4_percent -iresp 6 Stdtarg_2_lag4_percent -iresp 7 Stdtarg_3_lag4_percent -iresp 8 Newdis_1_lag4_percent -iresp 9 Newdis_2_lag4_percent -iresp 10 Newdis_3_lag4_percent -iresp 11 Stddis_1_lag4_percent -iresp 12 Stddis_2_lag4_percent -iresp 13 Stddis_3_lag4_percent -bucket NI25results_lag4_percent\n
It is the step that comes after this in afni when the data is resampled by underlaying the structural image to the functional recording that I am doing wrong. I've tried this multiple times and keep getting the same resolution of 7221032 voxels/nodes in my data and the TT_daemon brain map only has a resolution of 4643401 and with that all masks made from it. I just don't know which step I am missing and there is no documentation from my predecessors as to how they processed the data.
Thank you
