Hi,
I am wondering if this is correct, trying to check my data processing with my predecessors from 3 years ago who no longer work here. I am trying to make stim files and can't find any information since afni webpages except for the message board appear to be down again, the second time this month. Could you please tell me if this procedure correct for making stim files?
Thank you very much!!!
waver -input Sample.txt -GAM -dt 2 > SAM.1d
waver -input Ntarg_1.txt -GAM -dt 2 > NT1.1d
waver -input Ntarg_2.txt -GAM -dt 2 > NT2.1d
waver -input Ntarg_3.txt -GAM -dt 2 > NT3.1d
waver -input Ftarg_1.txt -GAM -dt 2 > ST1.1d
waver -input Ftarg_2.txt -GAM -dt 2 > ST2.1d
waver -input Ftarg_3.txt -GAM -dt 2 > ST3.1d
waver -input Ndis_1.txt -GAM -dt 2 > ND1.1d
waver -input Ndis_2.txt -GAM -dt 2 > ND2.1d
waver -input Ndis_3.txt -GAM -dt 2 > ND3.1d
waver -input Fdis_1.txt -GAM -dt 2 > SD1.1d
waver -input Fdis_2.txt -GAM -dt 2 > SD2.1d
waver -input Fdis_3.txt -GAM -dt 2 > SD3.1d
waver -input Scr.txt -GAM -dt 2 > Scr.1d
Followed by
afni_proc.py -subj_id NI12_SMc -dsets run1+orig run2+orig run3+orig run4+orig -blocks tshift volreg blur mask scale regress -copy_anat anat+orig -do_block align tlrc -volreg_align_to lastthe -volreg_align_e2a -volreg_tlrc_warp -blur_in_automask -regress_stim_times stimes.NT1.1D stimes.NT2.1D stimes.NT3.1D stimes.ND1.1D stimes.ND2.1D stimes.ND3.1D stimes.ST1.1D stimes.ST2.1D stimes.ST3.1D stimes.SD1.1D stimes.SD2.1D stimes.SD3.1D stimes.SAM.1D -test_stim_files no -regress_stim_labels NT1 NT2 NT3 ND1 ND2 ND3 ST1 ST2 ST3 SD1 SD2 SD3 SAM -regress_basis 'TENT(0,16,9)' -regress_opts_3dD -num_glt 16 -GOFORIT 13 -allzero_ok -gltsym 'SYM: +NT1 +NT2 +NT3 -ND1 -ND2 -ND3' -glt_label 1 NTvND -gltsym 'SYM: +ST1 +ST2 +ST3 -SD1 -SD2 -SD3' -glt_label 2 STvSD -gltsym 'SYM: +NT1 +NT2 +NT3 -ST1 -ST2 -ST3' -glt_label 3 NTvST -gltsym 'SYM: +ND1 +ND2 +ND3 -SD1 -SD2 -SD3' -glt_label 4 NDvSD -gltsym 'SYM: +NT1 -NT2 -NT3' -glt_label 5 NTrep -gltsym 'SYM: +ND1 -ND2 -ND3' -glt_label 6 NDrep -gltsym 'SYM: +ST1 -ST2 -ST3' -glt_label 7 STrep -gltsym 'SYM: +SD1 -SD2 -SD3' -glt_label 8 SDrep -gltsym 'SYM: +NT1 +ST1 -NT2 -NT3 -ST2 -ST3' -glt_label 9 Trep -gltsym 'SYM: +ND1 +SD1 -ND2 -ND3 -SD2 -SD3' -glt_label 10 Drep -gltsym 'SYM: +ST1 +SD1 -ST2 -ST3 -SD2 -SD3' -glt_label 11 Srep -gltsym 'SYM: +NT1 +ND1 -NT2 -NT3 -ND2 -ND3' -glt_label 12 Nrep -gltsym 'SYM: +NT1 +ND1 +ST1 +SD1 -NT2 -NT3 -ND2 -ND3 -ST2 -ST3 -SD2 -SD3' -glt_label 13 Rep -gltsym 'SYM: +NT1 +NT2 +NT3 +ST1 +ST2 +ST3 -ND1 -ND2 -ND3 -SD1 -SD2 -SD3' -glt_label 14 TvD -gltsym 'SYM: +ST1 +ST2 +ST3 +SD1 +SD2 +SD3 -NT1 -NT2 -NT3 -ND1 -ND2 -ND3' -glt_label 15 SvN -gltsym 'SYM: +SAM -NT1 -NT2 -NT3 -ND1 -ND2 -ND3 -ST1 -ST2 -ST3 -SD1 -SD2 -SD3' -glt_label 16 SAMvAll -regress_est_blur_epits -regress_est_blur_errts