AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Sabrina
October 28, 2015 11:16AM
I followed your advice and ran

waver -input Sample_a.txt -GAM -dt 2 > SAM.1D
waver -input nTAR1_a.txt -GAM -dt 2 > NT1.1D
waver -input nTAR2_a.txt -GAM -dt 2 > NT2.1D
waver -input nTAR3_a.txt -GAM -dt 2 > NT3.1D
waver -input sTAR1_a.txt -GAM -dt 2 > ST1.11D
waver -input sTAR2_a.txt -GAM -dt 2 > ST2.1D
waver -input sTAR3_a.txt -GAM -dt 2 > ST3.1D
waver -input nDIS1_a.txt -GAM -dt 2 > ND1.1D
waver -input nDIS2_a.txt -GAM -dt 2 > ND2.1D
waver -input nDIS3_a.txt -GAM -dt 2 > ND3.1D
waver -input sDIS1_a.txt -GAM -dt 2 > SD1.1D
waver -input sDIS2_a.txt -GAM -dt 2 > SD2.1D
waver -input sDIS3_a.txt -GAM -dt 2 > SD3.1D
waver -input Scr_a.txt -GAM -dt 2 > Scr.1D

followed by

afni_proc.py -subj_id NI01_SMc -dsets run1+orig run2+orig run3+orig run4+orig -blocks tshift volreg blur mask scale regress -copy_anat anat+orig -do_block align tlrc -volreg_align_to last -volreg_align_e2a -volreg_tlrc_warp -blur_in_automask -regress_stim_times NT1.1D NT2.1D NT3.1D ND1.1D ND2.1D ND3.1D ST1.1D ST2.1D ST3.1D SD1.1D SD2.1D SD3.1D SAM.1D -test_stim_files no -regress_stim_labels NT1 NT2 NT3 ND1 ND2 ND3 ST1 ST2 ST3 SD1 SD2 SD3 SAM -regress_basis 'TENT(0,16,9)' -regress_opts_3dD -num_glt 16 -GOFORIT 13 -allzero_ok -gltsym 'SYM: +NT1 +NT2 +NT3 -ND1 -ND2 -ND3' -glt_label 1 NTvND -gltsym 'SYM: +ST1 +ST2 +ST3 -SD1 -SD2 -SD3' -glt_label 2 STvSD -gltsym 'SYM: +NT1 +NT2 +NT3 -ST1 -ST2 -ST3' -glt_label 3 NTvST -gltsym 'SYM: +ND1 +ND2 +ND3 -SD1 -SD2 -SD3' -glt_label 4 NDvSD -gltsym 'SYM: +NT1 -NT2 -NT3' -glt_label 5 NTrep -gltsym 'SYM: +ND1 -ND2 -ND3' -glt_label 6 NDrep -gltsym 'SYM: +ST1 -ST2 -ST3' -glt_label 7 STrep -gltsym 'SYM: +SD1 -SD2 -SD3' -glt_label 8 SDrep -gltsym 'SYM: +NT1 +ST1 -NT2 -NT3 -ST2 -ST3' -glt_label 9 Trep -gltsym 'SYM: +ND1 +SD1 -ND2 -ND3 -SD2 -SD3' -glt_label 10 Drep -gltsym 'SYM: +ST1 +SD1 -ST2 -ST3 -SD2 -SD3' -glt_label 11 Srep -gltsym 'SYM: +NT1 +ND1 -NT2 -NT3 -ND2 -ND3' -glt_label 12 Nrep -gltsym 'SYM: +NT1 +ND1 +ST1 +SD1 -NT2 -NT3 -ND2 -ND3 -ST2 -ST3 -SD2 -SD3' -glt_label 13 Rep -gltsym 'SYM: +NT1 +NT2 +NT3 +ST1 +ST2 +ST3 -ND1 -ND2 -ND3 -SD1 -SD2 -SD3' -glt_label 14 TvD -gltsym 'SYM: +ST1 +ST2 +ST3 +SD1 +SD2 +SD3 -NT1 -NT2 -NT3 -ND1 -ND2 -ND3' -glt_label 15 SvN -gltsym 'SYM: +SAM -NT1 -NT2 -NT3 -ND1 -ND2 -ND3 -ST1 -ST2 -ST3 -SD1 -SD2 -SD3' -glt_label 16 SAMvAll -regress_est_blur_epits -regress_est_blur_errts

When I used the

tcsh -xef proc.NI01_SMc |& tee output.proc.NI01_SMc

command I received an error message that the proc.NI01_SMc did not exist. I also noticed that one of the two original processing used a 3dDeconvolve command after the waver command. How can I fix this?

Thank you very much!!!

Sabrina
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Subject Author Posted

how to make stim files

Sabrina October 27, 2015 10:59AM

Re: how to make stim files

rick reynolds October 27, 2015 03:24PM

Re: how to make stim files

Sabrina October 27, 2015 03:52PM

Re: how to make stim files

rick reynolds October 28, 2015 09:31AM

Re: how to make stim files

Sabrina October 28, 2015 11:16AM

Re: how to make stim files

Sabrina October 28, 2015 11:52AM

Re: how to make stim files

Sabrina October 28, 2015 11:57AM

Re: how to make stim files

rick reynolds October 28, 2015 12:36PM

Re: how to make stim files

rick reynolds October 28, 2015 12:30PM