AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 07, 2016 12:47PM
Hi gurus,

I'm not quite as clear on how dynamic linking works as I'd like to be, but this seems fishy. The @update.afni.binaries was from a built-from-source install with other_builds/Makefile.linux_fedora_19_64 (is that discrepancy intentional?).

Could this just have happened because libpng15.so was what was there?

Isaac

$ @update.afni.binaries -package linux_fedora_21_64
-- have AFNI binaries under /study/cook-lab/abin
-- install dir: using existing /study/cook-lab/abin
-- attempting to install package linux_fedora_21_64 under
   install dir: /study/cook-lab/abin...
-- have install dir
++ working in new temp dir, .tmp.install
++ getting install prog linux_fedora_21_64/@update.afni.binaries ...
--2016-01-07 11:35:02--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 24368 (24K) [text/plain]
Saving to: ‘@update.afni.binaries’

100%[======================================>] 24,368      --.-K/s   in 0.04s   

2016-01-07 11:35:02 (655 KB/s) - ‘@update.afni.binaries’ saved [24368/24368]

-- @update.afni.binaries is current, continuing with this version...
++ downloading test file linux_fedora_21_64/afni ...
--2016-01-07 11:35:02--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 12333532 (12M) [text/plain]
Saving to: ‘afni’

100%[======================================>] 12,333,532  4.82MB/s   in 2.4s   

2016-01-07 11:35:05 (4.82 MB/s) - ‘afni’ saved [12333532/12333532]


++ update needed, installing...

++ downloading full linux_fedora_21_64.tgz package...
--2016-01-07 11:35:06--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 980824073 (935M) [application/x-gzip]
Saving to: ‘linux_fedora_21_64.tgz’

100%[======================================>] 980,824,073 11.0MB/s   in 47s    

2016-01-07 11:35:55 (19.9 MB/s) - ‘linux_fedora_21_64.tgz’ saved [980824073/980824073]

++ extracting package linux_fedora_21_64...
++ backing up current binaries to auto_backup.linux_fedora_21_64
++ installing new binaries...
++ running apsearch -update_all_afni_help ...
apsearch: error while loading shared libraries: libpng16.so.16: cannot open shared object file: No such file or directory
done, yay (binaries are under /study/cook-lab/abin)
$ ldd $(which apsearch)
	linux-vdso.so.1 =>  (0x00007ffc367e7000)
	libXm.so.4 => /lib64/libXm.so.4 (0x00007f438f6be000)
	libXt.so.6 => /lib64/libXt.so.6 (0x00007f438f457000)
	libXft.so.2 => /lib64/libXft.so.2 (0x00007f438f240000)
	libXp.so.6 => /lib64/libXp.so.6 (0x00007f438f037000)
	libXpm.so.4 => /lib64/libXpm.so.4 (0x00007f438ee25000)
	libXext.so.6 => /lib64/libXext.so.6 (0x00007f438ec12000)
	libXmu.so.6 => /lib64/libXmu.so.6 (0x00007f438e9f7000)
	libSM.so.6 => /lib64/libSM.so.6 (0x00007f438e7ef000)
	libICE.so.6 => /lib64/libICE.so.6 (0x00007f438e5d2000)
	libX11.so.6 => /lib64/libX11.so.6 (0x00007f438e294000)
	libpython2.7.so.1.0 => /lib64/libpython2.7.so.1.0 (0x00007f438dece000)
	libpng16.so.16 => not found
	libz.so.1 => /lib64/libz.so.1 (0x00007f438dcb7000)
	libexpat.so.1 => /lib64/libexpat.so.1 (0x00007f438da8d000)
	libm.so.6 => /lib64/libm.so.6 (0x00007f438d78a000)
	libdl.so.2 => /lib64/libdl.so.2 (0x00007f438d586000)
	libc.so.6 => /lib64/libc.so.6 (0x00007f438d1c5000)
	libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007f438cf6f000)
	libpng15.so.15 => /lib64/libpng15.so.15 (0x00007f438cd44000)
	libfontconfig.so.1 => /lib64/libfontconfig.so.1 (0x00007f438cb08000)
	libfreetype.so.6 => /lib64/libfreetype.so.6 (0x00007f438c861000)
	libXrender.so.1 => /lib64/libXrender.so.1 (0x00007f438c657000)
	libXau.so.6 => /lib64/libXau.so.6 (0x00007f438c453000)
	libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f438c24d000)
	libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f438c02c000)
	libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f438be10000)
	libutil.so.1 => /lib64/libutil.so.1 (0x00007f438bc0c000)
	/lib64/ld-linux-x86-64.so.2 (0x00007f438fbd1000)
Subject Author Posted

linux_fedora_21_64 links to both libpng15.so and libpng16.so

Isaac Schwabacher January 07, 2016 12:47PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds January 07, 2016 01:28PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Isaac Schwabacher January 07, 2016 02:29PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds January 07, 2016 04:04PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Isaac Schwabacher January 07, 2016 05:01PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Leif Neve February 16, 2016 10:33PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds February 17, 2016 08:19AM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Leif Neve February 17, 2016 08:54AM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds February 17, 2016 08:56AM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Leif Neve February 17, 2016 09:02AM