History of AFNI updates  

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January 07, 2016 12:47PM
Hi gurus,

I'm not quite as clear on how dynamic linking works as I'd like to be, but this seems fishy. The @update.afni.binaries was from a built-from-source install with other_builds/Makefile.linux_fedora_19_64 (is that discrepancy intentional?).

Could this just have happened because libpng15.so was what was there?

Isaac

$ @update.afni.binaries -package linux_fedora_21_64
-- have AFNI binaries under /study/cook-lab/abin
-- install dir: using existing /study/cook-lab/abin
-- attempting to install package linux_fedora_21_64 under
   install dir: /study/cook-lab/abin...
-- have install dir
++ working in new temp dir, .tmp.install
++ getting install prog linux_fedora_21_64/@update.afni.binaries ...
--2016-01-07 11:35:02--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 24368 (24K) [text/plain]
Saving to: ‘@update.afni.binaries’

100%[======================================>] 24,368      --.-K/s   in 0.04s   

2016-01-07 11:35:02 (655 KB/s) - ‘@update.afni.binaries’ saved [24368/24368]

-- @update.afni.binaries is current, continuing with this version...
++ downloading test file linux_fedora_21_64/afni ...
--2016-01-07 11:35:02--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 12333532 (12M) [text/plain]
Saving to: ‘afni’

100%[======================================>] 12,333,532  4.82MB/s   in 2.4s   

2016-01-07 11:35:05 (4.82 MB/s) - ‘afni’ saved [12333532/12333532]


++ update needed, installing...

++ downloading full linux_fedora_21_64.tgz package...
--2016-01-07 11:35:06--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 980824073 (935M) [application/x-gzip]
Saving to: ‘linux_fedora_21_64.tgz’

100%[======================================>] 980,824,073 11.0MB/s   in 47s    

2016-01-07 11:35:55 (19.9 MB/s) - ‘linux_fedora_21_64.tgz’ saved [980824073/980824073]

++ extracting package linux_fedora_21_64...
++ backing up current binaries to auto_backup.linux_fedora_21_64
++ installing new binaries...
++ running apsearch -update_all_afni_help ...
apsearch: error while loading shared libraries: libpng16.so.16: cannot open shared object file: No such file or directory
done, yay (binaries are under /study/cook-lab/abin)
$ ldd $(which apsearch)
	linux-vdso.so.1 =>  (0x00007ffc367e7000)
	libXm.so.4 => /lib64/libXm.so.4 (0x00007f438f6be000)
	libXt.so.6 => /lib64/libXt.so.6 (0x00007f438f457000)
	libXft.so.2 => /lib64/libXft.so.2 (0x00007f438f240000)
	libXp.so.6 => /lib64/libXp.so.6 (0x00007f438f037000)
	libXpm.so.4 => /lib64/libXpm.so.4 (0x00007f438ee25000)
	libXext.so.6 => /lib64/libXext.so.6 (0x00007f438ec12000)
	libXmu.so.6 => /lib64/libXmu.so.6 (0x00007f438e9f7000)
	libSM.so.6 => /lib64/libSM.so.6 (0x00007f438e7ef000)
	libICE.so.6 => /lib64/libICE.so.6 (0x00007f438e5d2000)
	libX11.so.6 => /lib64/libX11.so.6 (0x00007f438e294000)
	libpython2.7.so.1.0 => /lib64/libpython2.7.so.1.0 (0x00007f438dece000)
	libpng16.so.16 => not found
	libz.so.1 => /lib64/libz.so.1 (0x00007f438dcb7000)
	libexpat.so.1 => /lib64/libexpat.so.1 (0x00007f438da8d000)
	libm.so.6 => /lib64/libm.so.6 (0x00007f438d78a000)
	libdl.so.2 => /lib64/libdl.so.2 (0x00007f438d586000)
	libc.so.6 => /lib64/libc.so.6 (0x00007f438d1c5000)
	libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007f438cf6f000)
	libpng15.so.15 => /lib64/libpng15.so.15 (0x00007f438cd44000)
	libfontconfig.so.1 => /lib64/libfontconfig.so.1 (0x00007f438cb08000)
	libfreetype.so.6 => /lib64/libfreetype.so.6 (0x00007f438c861000)
	libXrender.so.1 => /lib64/libXrender.so.1 (0x00007f438c657000)
	libXau.so.6 => /lib64/libXau.so.6 (0x00007f438c453000)
	libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f438c24d000)
	libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f438c02c000)
	libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f438be10000)
	libutil.so.1 => /lib64/libutil.so.1 (0x00007f438bc0c000)
	/lib64/ld-linux-x86-64.so.2 (0x00007f438fbd1000)
Subject Author Posted

linux_fedora_21_64 links to both libpng15.so and libpng16.so

Isaac Schwabacher January 07, 2016 12:47PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds January 07, 2016 01:28PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Isaac Schwabacher January 07, 2016 02:29PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds January 07, 2016 04:04PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Isaac Schwabacher January 07, 2016 05:01PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Leif Neve February 16, 2016 10:33PM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds February 17, 2016 08:19AM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Leif Neve February 17, 2016 08:54AM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

rick reynolds February 17, 2016 08:56AM

Re: linux_fedora_21_64 links to both libpng15.so and libpng16.so

Leif Neve February 17, 2016 09:02AM