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February 05, 2016 03:47PM
I'm running an afni_proc script generated with the following command:

afni_proc.py -subj_id 2516FSorig -dsets 2516.AllRuns+orig -copy_anat 2516.FSorig.nii.gz -blocks tshift align volreg blur mask regress -volreg_align_e2a -regress_motion_per_run -regress_censor_motion 0.2 -regress_bandpass 0.01 0.1 -regress_apply_mot_types demean deriv -regress_est_blur_errts

I adjusted the volume registration to be epi to anatomy in the script but otherwise left it unchanged. It fails at the 3dTproject step, command:

3dTproject -polort 0 -input pb03.$subj.r*.blur+orig.HEAD -censor motion_${subj}_censor.1D -cenmode ZERO -ort X.nocensor.xmat.1D -prefix errts.${subj}.tproject

Error message:
Fatal Signal 11 (SIGSEGV) received
THD_dset_censored_to_vectim
TPR_process_data
3dTproject
Bottom of Debug Stack
** AFNI version = AFNI_2011_12_21_1014 Compile date = Dec 26 2014
** [[Precompiled binary =Debian-x86_64-1-gnu: Dec 26 2014]]
** Program Abort **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
Subject Author Posted

Fatal signal 11 - 3dTproject

Sean McGarry February 05, 2016 03:47PM

Re: Fatal signal 11 - 3dTproject

Peter Molfese February 06, 2016 08:41AM

Re: Fatal signal 11 - 3dTproject

rick reynolds February 06, 2016 09:42AM