AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 17, 2016 05:30PM
Hi Rick,

I found a workaround to this problem. However, for future reference, it might be good to know what my options are.

Yes, I did add the -num_glt option to the -regress_opts_3dD command. So that didn't work. When I ran afni_proc.py and tried to compute more than 10 GLTs with -regress_opts_3dD, I got an error saying I needed to use the -num_glt option to allow for more than 10 GLTs.

Here's the gist of the command I ran:

afni_proc.py \
-regress_stim_times {stim_time_files} \
-regress_stim_labels {stim_labels} \
-regress_basis_multi 'BLOCK(1,1)' \
-num_glt \ #this is where I added the num_glt command, but it did not work
-regress_opts_3dD \
-jobs 4 \
-gltsym '{contrast_1}' \
-gltlabel {label_1} \
...
-gltsym '{contrast_11}' \
-gltlabel {label_11} \
-regress_run_clustsim no \
...

Thanks for looking into this.

Phil
Subject Author Posted

More than 10 GLTs in afni_proc.py

pdeming February 19, 2016 11:12AM

Re: More than 10 GLTs in afni_proc.py

rick reynolds February 19, 2016 11:39AM

Re: More than 10 GLTs in afni_proc.py

pdeming March 17, 2016 05:30PM

Re: More than 10 GLTs in afni_proc.py

rick reynolds March 17, 2016 08:30PM