AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 07, 2016 05:47PM
If you want to add a third gray level or another color to the two level gray, you can write out the existing grayscale colormap by clicking 'w' with the cursor over the grayscale bar. The file for this simple colormap is just two rows of RGB values with three columns for the Red, Green and Blue fractions, respectively. Edit the file with a text editor and add a row. Here's an example adding a pink color to the list:

% more gray_red.1D.cmap
0.70000 0.70000 0.70000
0.40000 0.40000 0.40000
1 0.5 0.5

The last line is the new pink color. Save the file with the extension ".cmap". The easiest way to use it is by selecting the "New" button in the suma object controller menu next to the "Cmp" selection button. Select the colormap you just created. In the object controller, you can flip the colorbar, threshold, etc. using the new colormap.
Subject Author Posted

changing contrast of underlay brain with SUMA

irenej24 March 01, 2016 04:33PM

Re: changing contrast of underlay brain with SUMA

ptaylor March 01, 2016 05:12PM

Re: changing contrast of underlay brain with SUMA

Daniel Glen March 02, 2016 04:25PM

Re: changing contrast of underlay brain with SUMA

irenej24 March 03, 2016 10:51AM

Re: changing contrast of underlay brain with SUMA (one more quesiton!)

irenej24 March 03, 2016 03:10PM

Re: changing contrast of underlay brain with SUMA (one more quesiton!)

Daniel Glen March 07, 2016 05:47PM

Re: changing contrast of underlay brain with SUMA (one more quesiton!)

irenej24 March 07, 2016 06:25PM