atlas3.cmrr.umn.edu 101> afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 2.6.32-504.8.1.el6.x86_64
version: #1 SMP Fri Dec 19 12:09:25 EST 2014
distribution: Red Hat Enterprise Linux Server 6.7 Santiago
number of CPUs: 32
apparent login shell: tcsh
--------------------- AFNI and related program tests ---------------------
which afni : /home/orochi-raid1/pburton/afni_08122015/afni
afni version : Precompiled binary linux_openmp_64: Aug 11 2015
which python : /usr/bin/python
python version : 2.6.6
which R : /usr/bin/R
R version : R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree"
which tcsh : /bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/orochi-raid1/pburton/afni_08122015/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python)
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
checking for $HOME files...
.afnirc : found
.sumarc : missing
.afni/help/all_progs.COMP : missing
------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib64/python2.6/site-packages/PyQt4
++ module loaded: PyQt4
------------------------------- path vars --------------------------------
PATH = /home/orochi-raid1/pburton/afni_08122015:/opt/local/fix1.06/fix1.06:/opt/local/fsl-5.0.7/fsl/bin:/opt/local/mricron-2012-07/x86_64:/home/orochi-raid1/pburton/afni_08122015:/opt/local/fix1.06/fix1.06:/opt/local/fsl-5.0.7/fsl/bin:/opt/local/mricron-2012-07/x86_64:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/NX/bin:/usr/X11R6/bin:/usr/NX/bin:/usr/NX/bin
PYTHONPATH =
LD_LIBRARY_PATH = /opt/local/cuda-5.5/lib64:/opt/local/fsl-5.0.7/fsl/lib
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
atlas : found TT_N27+tlrc under /home/orochi-raid1/pburton/afni_08122015
------------------------------ OS specific -------------------------------
---------------------------- general comments ----------------------------
* consider running "suma -update_env" for .sumarc
* consider running "apsearch -update_all_afni_help"