AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 27, 2016 03:20PM
Hi Mingbo,

I just tested this by resampling to ASR and running
3dZcutup and it worked well. Would you please
provide your exact command, along with the output
from 3dinfo (no HISTORY is needed)?

To cut in other directions, is it good enough to
run 3dresample -orient first? That is what I just
did.


If the centers are far off, consider fixing that
by running @Align_Centers before align_epie_ana.py.

- rick
Subject Author Posted

3dZcutup might assume RAI orientation for all data

Mingbo June 27, 2016 03:08PM

Re: 3dZcutup might assume RAI orientation for all data

rick reynolds June 27, 2016 03:20PM

Re: 3dZcutup might assume RAI orientation for all data

Mingbo June 27, 2016 05:07PM

Re: 3dZcutup might assume RAI orientation for all data

rick reynolds June 27, 2016 06:00PM

Re: 3dZcutup might assume RAI orientation for all data

Mingbo June 27, 2016 06:51PM