AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 27, 2016 05:07PM
Hi Rick,
Thanks! Here is the command I used:

3dZcutup -keep 29 101 -prefix topup2.5GRAPPA_iout_alzc.nii topup2.5GRAPPA_iout_al+orig.
++ 3dZcutup: AFNI version=AFNI_16.1.25 (Jun 15 2016) [64-bit]
*** -keep 29 101 goes past last slice 69

The 3dinfo output of the dataset is below:

3dinfo topup2.5GRAPPA_iout_al+orig.
++ 3dinfo: AFNI version=AFNI_16.1.25 (Jun 15 2016) [64-bit]

Dataset File: topup2.5GRAPPA_iout_al+orig
Identifier Code: XYZ_aM1OgtPY9K9_dyDMcrjzAg Creation Date: Mon Jun 27 14:35:21 2016
Template Space: ORIG
Dataset Type: Anat Bucket (-abuc)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK
Storage Space: 17,478,720 (17 million [mega]) bytes
Geometry String: "MATRIX(0,0,2.5,-86.25,2.5,0,0,-149.7524,0,-2.5,0,113.303):102,102,70"
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Anterior-to-Posterior
second (y) = Superior-to-Inferior
third (z) = Right-to-Left [-orient ASR]
R-to-L extent: -86.250 [R] -to- 86.250 [L] -step- 2.500 mm [ 70 voxels]
A-to-P extent: -149.752 [A] -to- 102.748 [P] -step- 2.500 mm [102 voxels]
I-to-S extent: -139.197 -to- 113.303 [S] -step- 2.500 mm [102 voxels]
Number of time steps = 6 Time step = 8.00000s Origin = 0.00000s
-- At sub-brick #0 '#0' datum type is float: -198.612 to 3700.47
-- At sub-brick #1 '#1' datum type is float: -198.242 to 3764.38
-- At sub-brick #2 '#2' datum type is float: -210.951 to 3730.53
Subject Author Posted

3dZcutup might assume RAI orientation for all data

Mingbo June 27, 2016 03:08PM

Re: 3dZcutup might assume RAI orientation for all data

rick reynolds June 27, 2016 03:20PM

Re: 3dZcutup might assume RAI orientation for all data

Mingbo June 27, 2016 05:07PM

Re: 3dZcutup might assume RAI orientation for all data

rick reynolds June 27, 2016 06:00PM

Re: 3dZcutup might assume RAI orientation for all data

Mingbo June 27, 2016 06:51PM