AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 01, 2016 12:40PM
I suspect the affine alignment is not working properly for this, and the transformation is still too far off. You might try changing the cost function for the affine alignment to another like lpc+ZZ, lpa or nmi. Also switch the "-ginormous_move" to "-giant_move" since you are using @AlignCenters separately. You can try align_epi_anat.py separately to experiment with the options and see if you are getting a reasonable alignment between your anat and EPI data.
Subject Author Posted

NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 01, 2016 10:09AM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Daniel Glen July 01, 2016 12:40PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 01, 2016 01:24PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Daniel Glen July 01, 2016 01:43PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 01, 2016 04:25PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Daniel Glen July 01, 2016 04:43PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 05, 2016 07:15AM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Daniel Glen July 05, 2016 11:32AM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 06, 2016 08:07AM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 06, 2016 10:50AM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Daniel Glen July 06, 2016 03:53PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 06, 2016 03:57PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Daniel Glen July 06, 2016 04:44PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 06, 2016 06:06PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

rick reynolds July 01, 2016 08:54PM

Re: NL_warp: Fatal Signal 6 (SIGABRT) received

Robin July 04, 2016 04:00AM