Major edit. Removed all the old text.
I ran all the steps individually and everything seemed sucessfull.
My collaborator sent me their script which I used as a template. It might have been some formating error on that one (even though it did not seem that way - You usually get errors about row endings in that case). When I ran dos2unix on it, it seems to work...
This might have been a combination of error which made it hard to trouble shoot. My initial idea, to run @Align_Centers like last time, would probably have solved it directly if not the script was "tainted". Do you think this is a possible explanation?
At least I learned a bit about the warping steps!
Edited 2 time(s). Last edit at 07/06/2016 03:53PM by Robin.