Here is a shortened version of the command I was running which has been giving me problems in employing the -Clustsim option in 3dttest++. I have many more subjects than I have listed here (45 in set A, 37 in set B), but have truncated the listing here for purposes of display/efficiency. Any thoughts would be more than welcome; let me know if something is unclear here.
Thanks again for your time,
Dominic
3dttest++ -setA ControlsResting \
SB115_fu1 /space/raid3/data/totten/SB/SB115_fu1/resting/SB115_fu1.results/SB115_fu1_R_VS_Corr+tlrc'[0]' \
SB184 /space/raid3/data/totten/SB/SB184/resting/SB184.results/SB184_R_VS_Corr+tlrc'[0]' \
SB061 /space/raid3/data/totten/SB/SB061/resting/SB061.results/SB061_R_VS_Corr+tlrc'[0]' \
SB300_fu1 /space/raid3/data/totten/SB/SB300_fu1/resting/SB300_fu1.results/SB300_fu1_R_VS_Corr+tlrc'[0]' \
SB235_fu1 /space/raid3/data/totten/SB/SB235_fu1/resting/SB235_fu1.results/SB235_fu1_R_VS_Corr+tlrc'[0]' \
SB190 /space/raid3/data/totten/SB/SB190/resting/SB190.results/SB190_R_VS_Corr+tlrc'[0]' \
SB152_fu1 /space/raid3/data/totten/SB/SB152_fu1/resting/SB152_fu1.results/SB152_fu1_R_VS_Corr+tlrc'[0]' \
SB276 /space/raid3/data/totten/SB/SB276/resting/SB276.results/SB276_R_VS_Corr+tlrc'[0]' \
SB144 /space/raid3/data/totten/SB/SB144/resting/SB144.results/SB144_R_VS_Corr+tlrc'[0]' \
SB001 /space/raid3/data/totten/SB/SB001/resting/SB001.results/SB001_R_VS_Corr+tlrc'[0]' \
-setB PIsResting \
SB085 /space/raid3/data/totten/SB/SB085/resting/SB085.results/SB085_R_VS_Corr+tlrc'[0]' \
SB068 /space/raid3/data/totten/SB/SB068/resting/SB068.results/SB068_R_VS_Corr+tlrc'[0]' \
SB046_fu1 /space/raid3/data/totten/SB/SB046_fu1/resting/SB046_fu1.results/SB046_fu1_R_VS_Corr+tlrc'[0]' \
SB322 /space/raid3/data/totten/SB/SB322/resting/SB322.results/SB322_R_VS_Corr+tlrc'[0]' \
SB025_fu1 /space/raid3/data/totten/SB/SB025_fu1/resting/SB025_fu1.results/SB025_fu1_R_VS_Corr+tlrc'[0]' \
SB307_fu1 /space/raid3/data/totten/SB/SB307_fu1/resting/SB307_fu1.results/SB307_fu1_R_VS_Corr+tlrc'[0]' \
SB147 /space/raid3/data/totten/SB/SB147/resting/SB147.results/SB147_R_VS_Corr+tlrc'[0]' \
SB205 /space/raid3/data/totten/SB/SB205/resting/SB205.results/SB205_R_VS_Corr+tlrc'[0]' \
SB227 /space/raid3/data/totten/SB/SB227/resting/SB227.results/SB227_R_VS_Corr+tlrc'[0]' \
SB081_fu1 /space/raid3/data/totten/SB/SB081_fu1/resting/SB081_fu1.results/SB081_fu1_R_VS_Corr+tlrc'[0]' \
...
-covariates Covariates.1D \
-center SAME \
-mask groupEPImask_80percentoverlap+tlrc.BRIK \
-resid 3dttest_residuals_test_7_2016 \
-toz \
-Clustsim \
-prefix test_output
