afni.nimh.nih.gov

Hi Rick,

Okay the ${subject}.fs is a directory. That directory contains a mri folder with the aseg files. I assume I should be using the aseg files coming from the ${subject}.fs and not the fsaverage folder, then mri?

Sorry for all the questions and confusion. Still no _rank file though. I assume the T1.mgz is the input anat file we would need from freesurfer?

Emily