AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 23, 2016 08:56AM
Hi Emily,

That is correct, presumably, though we differ in the
way the ordering is described in 2 ways. We would say
alt+z uses ordering 0,2,4,1,3,5, rather than 1,4,2,5,3,6.
But they are probably just 2 ways of describing the same
thing.

Your 1,4,2,5,3,6 indices probably mean: "for each slice
position, what temporal position does it come from?" So
the first slice was the first acquired, the second slice
was the fourth acquired, etc.

To understand 0,2,4,1,3,5, first note that we index the
slices as offsets, so they just start from 0. Then it
is just the actual order that the slices were acquired,
i.e. first slice 0, then 2, then 4, then 1, 3 and 5.

That is how we will describe them in general, so it is
important to understand the difference.

Anyway, is that clear? Am I correct in the interpretation
of your description the acquisition order?

- rick
Subject Author Posted

to 3d

Emily September 21, 2016 08:45AM

Re: to 3d

rick reynolds September 21, 2016 04:03PM

Re: to 3d

Emily September 22, 2016 09:34AM

Re: to 3d

rick reynolds September 23, 2016 08:56AM

Re: to 3d

Emily September 26, 2016 08:58AM

Re: to 3d

rick reynolds September 26, 2016 09:34AM

Re: to 3d

Emily September 26, 2016 07:48PM

Re: to 3d

rick reynolds September 27, 2016 01:14PM

Re: to 3d

Emily October 09, 2016 02:35PM

Re: to 3d

rick reynolds October 09, 2016 09:36PM

Re: to 3d

Emily October 13, 2016 03:45PM

Re: to 3d

rick reynolds October 13, 2016 03:57PM