AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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krisknut
November 18, 2016 02:39PM
I see that the command is using the first 12 characters rather than the whole name, but I suspect some other problem is occurring too. I'm new to 3dtest++ and find the necessary syntax of the covariates file and the mapping between the 3dttest++ command unclear.

Here's the error message:

3dttest++ -setA 'S??.rest.3dTcorrMap.z+tlrc.BRIK' -prefix testing -mask clip_group_brainTissueMask_tSNR10_count_no19+tlrc. -covariates covariates_ageTT_no19b.txt
++ 3dttest++: AFNI version=AFNI_16.3.08 (Nov 4 2016) [64-bit]
++ Authored by: Zhark++
++ 123062 voxels in -mask dataset
++ Covariates file: 4 columns, each with 24 rows
+ Covariate column labels: Subject;Age;TT;Labels
+ Found 2 numeric columns: Age TT
+ Found 1 dataset name column: Labels
++ loading covariates
** ERROR: Can't find label 'S08.rest.3dT' in covariates file
** ERROR: Can't find label 'S09.rest.3dT' in covariates file
** ERROR: Can't find label 'S11.rest.3dT' in covariates file
** ERROR: Can't find label 'S13.rest.3dT' in covariates file
** ERROR: Can't find label 'S15.rest.3dT' in covariates file
** ERROR: Can't find label 'S16.rest.3dT' in covariates file
** ERROR: Can't find label 'S18.rest.3dT' in covariates file
** ERROR: Can't find label 'S22.rest.3dT' in covariates file
** ERROR: Can't find label 'S23.rest.3dT' in covariates file
** ERROR: Can't find label 'S24.rest.3dT' in covariates file
** ERROR: Can't find label 'S26.rest.3dT' in covariates file
** ERROR: Can't find label 'S28.rest.3dT' in covariates file
** ERROR: Can't find label 'S30.rest.3dT' in covariates file
** ERROR: Can't find label 'S31.rest.3dT' in covariates file
** ERROR: Can't find label 'S32.rest.3dT' in covariates file
** ERROR: Can't find label 'S33.rest.3dT' in covariates file
** ERROR: Can't find label 'S34.rest.3dT' in covariates file
** ERROR: Can't find label 'S37.rest.3dT' in covariates file
** ERROR: Can't find label 'S39.rest.3dT' in covariates file
** ERROR: Can't find label 'S41.rest.3dT' in covariates file
** ERROR: Can't find label 'S42.rest.3dT' in covariates file
** ERROR: Can't find label 'S44.rest.3dT' in covariates file
** ERROR: Can't find label 'S46.rest.3dT' in covariates file
** ERROR: Can't find label 'S48.rest.3dT' in covariates file

Fatal Signal 11 (SIGSEGV) received
THD_delete_3dim_dataset
3dttest++ main
Bottom of Debug Stack
** Command line was:
3dttest++ -setA 'S??.rest.3dTcorrMap.z+tlrc.BRIK' -prefix testing -mask clip_group_brainTissueMask_tSNR10_count_no19+tlrc. -covariates covariates_ageTT_no19b.txt
** AFNI version = AFNI_16.3.08 Compile date = Nov 4 2016
** [[Precompiled binary macosx_10.7_Intel_64: Nov 4 2016]]
** Program Death **
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Subject Author Posted

Fatal Signal 11 (SIGSEGV) received when running 3dttest++

krisknut November 18, 2016 02:39PM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

Bob Cox November 18, 2016 03:17PM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

krisknut November 21, 2016 08:38AM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

krisknut November 21, 2016 10:04AM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

rick reynolds November 21, 2016 10:53AM