AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 21, 2016 08:38AM
The covariates are of the format:
Subject Age TT Labels
S08 30 600 S08.rest.3dTcorrMap.z+tlrc.HEAD
S09...

I've also tried:
Subject Age TT Labels
S08 30 600 S08.rest.3dT
S09...

and got:
Analysis_TT_age: 3dttest++ -setA 'S??.rest.3dTcorrMap.z+tlrc.BRIK' -prefix testing -mask clip_group_brainTissueMask_tSNR10_count_no19+tlrc. -covariates covariates_ageTT_no19c.txt
++ 3dttest++: AFNI version=AFNI_16.3.08 (Nov 4 2016) [64-bit]
++ Authored by: Zhark++
++ 123062 voxels in -mask dataset
++ Covariates file: 4 columns, each with 24 rows
+ Covariate column labels: Subject;Age;TT;Labels
+ Found 2 numeric columns: Age TT
+ Found 1 dataset name column: Labels
++ loading covariates
** ERROR: Can't find label 'S08.rest.3dT' in covariates file
** ERROR: Can't find label 'S09.rest.3dT' in covariates file
etc.
Fatal Signal 11 (SIGSEGV) received
THD_delete_3dim_dataset
3dttest++ main
Bottom of Debug Stack
** Command line was:
3dttest++ -setA 'S??.rest.3dTcorrMap.z+tlrc.BRIK' -prefix testing -mask clip_group_brainTissueMask_tSNR10_count_no19+tlrc. -covariates covariates_ageTT_no19c.txt
** AFNI version = AFNI_16.3.08 Compile date = Nov 4 2016
** [[Precompiled binary macosx_10.7_Intel_64: Nov 4 2016]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/knutsonk/.afni.crashlog
Subject Author Posted

Fatal Signal 11 (SIGSEGV) received when running 3dttest++

krisknut November 18, 2016 02:39PM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

Bob Cox November 18, 2016 03:17PM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

krisknut November 21, 2016 08:38AM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

krisknut November 21, 2016 10:04AM

Re: Fatal Signal 11 (SIGSEGV) received when running 3dttest++

rick reynolds November 21, 2016 10:53AM