AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 01, 2016 01:05PM
Hello sir,

So by doing bandpassing and censoring i will not be able to measure the alff and falff of my data.

i am using this script to measure alff is it correct

afni_proc.py -subj_id $subj \
-script proc.$subj -scr_overwrite \
-blocks despike tshift align tlrc volreg blur mask regress \
-copy_anat $top_dir/co20141223_152112t1mpragetrap2iso10s023a1001.nii \
-tcat_remove_first_trs 3 \
-dsets $top_dir/20141223_152112ep2dpaceTR2500rests005a001.nii \
-volreg_align_e2a \
-blur_size 6.0 \
-mask_apply epi \
-mask_segment_anat yes \
-mask_segment_erode yes \
-regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean deriv \
-regress_ROI WMe \
-regress_RSFC \
-regress_run_clustsim no \
-regress_est_blur_errts


which function are you using to calculate alff?
Subject Author Posted

Alff/FAlff using AFNI

nik1446 November 29, 2016 03:24PM

Re: Alff/FAlff using AFNI

ptaylor November 29, 2016 04:13PM

Re: Alff/FAlff using AFNI

nik1446 November 29, 2016 04:19PM

Re: Alff/FAlff using AFNI

ptaylor December 01, 2016 07:28AM

Re: Alff/FAlff using AFNI

nik1446 December 01, 2016 01:05PM

Re: Alff/FAlff using AFNI

ptaylor December 01, 2016 04:07PM

Re: Alff/FAlff using AFNI

nik1446 December 06, 2016 04:57AM

Re: Alff/FAlff using AFNI

nik1446 December 13, 2016 02:50AM

Re: Alff/FAlff using AFNI

ptaylor December 14, 2016 12:51AM

Re: Alff/FAlff using AFNI

nik1446 December 14, 2016 04:38AM

Re: Alff/FAlff using AFNI

nik1446 November 29, 2016 04:23PM