History of AFNI updates  

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December 01, 2016 01:05PM
Hello sir,

So by doing bandpassing and censoring i will not be able to measure the alff and falff of my data.

i am using this script to measure alff is it correct

afni_proc.py -subj_id $subj \
-script proc.$subj -scr_overwrite \
-blocks despike tshift align tlrc volreg blur mask regress \
-copy_anat $top_dir/co20141223_152112t1mpragetrap2iso10s023a1001.nii \
-tcat_remove_first_trs 3 \
-dsets $top_dir/20141223_152112ep2dpaceTR2500rests005a001.nii \
-volreg_align_e2a \
-blur_size 6.0 \
-mask_apply epi \
-mask_segment_anat yes \
-mask_segment_erode yes \
-regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean deriv \
-regress_ROI WMe \
-regress_RSFC \
-regress_run_clustsim no \
-regress_est_blur_errts


which function are you using to calculate alff?
Subject Author Posted

Alff/FAlff using AFNI

nik1446 November 29, 2016 03:24PM

Re: Alff/FAlff using AFNI

ptaylor November 29, 2016 04:13PM

Re: Alff/FAlff using AFNI

nik1446 November 29, 2016 04:19PM

Re: Alff/FAlff using AFNI

ptaylor December 01, 2016 07:28AM

Re: Alff/FAlff using AFNI

nik1446 December 01, 2016 01:05PM

Re: Alff/FAlff using AFNI

ptaylor December 01, 2016 04:07PM

Re: Alff/FAlff using AFNI

nik1446 December 06, 2016 04:57AM

Re: Alff/FAlff using AFNI

nik1446 December 13, 2016 02:50AM

Re: Alff/FAlff using AFNI

ptaylor December 14, 2016 12:51AM

Re: Alff/FAlff using AFNI

nik1446 December 14, 2016 04:38AM

Re: Alff/FAlff using AFNI

nik1446 November 29, 2016 04:23PM