Hi! I just wanted ask others have experienced the issue. I generated an afni proc script and results folder using the new afni. When I checked the results folder, none of the files are in tlrc space? I pasted the proc script below. Any info would be greatly appreciated.
def create_afni_proc_for_subject_ert(subject):
template = '''afni_proc.py -subj_id {subj}
-script {output_dir}/afni.proc -scr_overwrite
-out_dir {output_dir}/results
-blocks tshift align tlrc volreg blur mask scale regress
-copy_anat {anat_dir}/{anat}+orig
-tcat_remove_first_trs {delete_nfirst}
-dsets
{dsets}
-volreg_align_to last
-volreg_align_e2a
-align_opts_aea -cost lpc+ZZ -giant_move
-tlrc_NL_warp
-blur_size 6
-regress_stim_times
{stim_dir}/{subj}_look_timing.1D
{stim_dir}/{subj}_maintain_timing.1D
{stim_dir}/{subj}_reappraise_timing.1D
-regress_stim_labels
look maintain reappraise
-regress_basis 'BLOCK(20,1)'
-regress_censor_motion {motion_max}
-regress_censor_outliers 0.1
-regress_reml_exec
-regress_compute_fitts
-regress_opts_3dD
-gltsym 'SYM: +look +maintain +reappraise'
-glt_label 1 Positive_Control
-jobs 12
-regress_make_ideal_sum sum_ideal.1D
-regress_est_blur_epits
-regress_est_blur_errts
'''
