AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
January 23, 2017 03:19PM
It is strange to see the rm.* files, which suggests
your processing script did not actually complete.

As for the difference, the rm* files should not be
there, so do not worry about them. But look at the
proc script for what the full_mask dataset is. That
is the union of EPI masks across runs, so it is a
slightly dilated EPI mask.

Your commands (3dMean/3dcalc) are trying to create a
full_mask dataset, but you already have that.


See example "c2" from the output of "3dmask_tool -help"
for a nice way to combine masks. Does that seem
reasonable?

- rick
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Subject Author Posted

Compute mask for several objects

heretic133 January 18, 2017 07:26PM

Re: Compute mask for several objects

rick reynolds January 23, 2017 03:19PM

Re: Compute mask for several objects

heretic133 January 26, 2017 04:16AM