AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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defenderfer
August 31, 2018 11:01AM
Thanks for any help. I am using a mac and tcsh shell.

My MVM file is titled MVM1.txt file using the command: tcsh -x MVM1.txt &. I receive this message:

3dMVM -prefix Accuracy -jobs 4
Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :
argument is of length zero
Calls: process.MVM.opts
Execution halted

Everything else is followed by "Command not found." Ive checked my syntax, but I don't know what needs to be fixed. Here is my script; Ive only included 3 subjects for the example.

#!/bin/tcsh
3dMVM -prefix Accuracy -jobs 4 \
-model 1 \
-wsVars "oxy*acc*noiseType" \
-num_glt 3 \
-gltLabel 1 oxyEff -gltCode 1 'oxy : 1*HbO -1*HbR' \
-gltLabel 2 accEff -gltCode 2 'acc : 1*right -1*wrong' \
-gltLabel 3 noiseTypeEff -gltCode 3 'noiseType : 1*vocod -1*noise' \
-dataTable \
Subj oxy acc noiseType InputFile \
S1001 HbO wrong vocod /p2process/S1001/viewer/Subject/1001_cond7_unmaskedOxy.nii \
S1001 HbO wrong noise /p2process/S1001/viewer/Subject/1001_cond6_unmaskedOxy.nii \
S1001 HbO right vocod /p2process/S1001/viewer/Subject/1001_cond5_unmaskedOxy.nii \
S1001 HbO right noise /p2process/S1001/viewer/Subject/1001_cond4_unmaskedOxy.nii \
S1001 HbR wrong vocod /p2process/S1001/viewer/Subject/1001_cond7_unmaskedDeoxy.nii \
S1001 HbR wrong noise /p2process/S1001/viewer/Subject/1001_cond6_unmaskedDeoxy.nii \
S1001 HbR right vocod /p2process/S1001/viewer/Subject/1001_cond5_unmaskedDeoxy.nii \
S1001 HbR right noise /p2process/S1001/viewer/Subject/1001_cond4_unmaskedDeoxy.nii \
S1003 HbO wrong vocod /p2process/S1003/viewer/Subject/1003_cond7_unmaskedOxy.nii \
S1003 HbO wrong noise /p2process/S1003/viewer/Subject/1003_cond6_unmaskedOxy.nii \
S1003 HbO right vocod /p2process/S1003/viewer/Subject/1003_cond5_unmaskedOxy.nii \
S1003 HbO right noise /p2process/S1003/viewer/Subject/1003_cond4_unmaskedOxy.nii \
S1003 HbR wrong vocod /p2process/S1003/viewer/Subject/1003_cond7_unmaskedDeoxy.nii \
S1003 HbR wrong noise /p2process/S1003/viewer/Subject/1003_cond6_unmaskedDeoxy.nii \
S1003 HbR right vocod /p2process/S1003/viewer/Subject/1003_cond5_unmaskedDeoxy.nii \
S1003 HbR right noise /p2process/S1003/viewer/Subject/1003_cond4_unmaskedDeoxy.nii \
S1004 HbO wrong vocod /p2process/S1004/viewer/Subject/1004_cond7_unmaskedOxy.nii \
S1004 HbO wrong noise /p2process/S1004/viewer/Subject/1004_cond6_unmaskedOxy.nii \
S1004 HbO right vocod /p2process/S1004/viewer/Subject/1004_cond5_unmaskedOxy.nii \
S1004 HbO right noise /p2process/S1004/viewer/Subject/1004_cond4_unmaskedOxy.nii \
S1004 HbR wrong vocod /p2process/S1004/viewer/Subject/1004_cond7_unmaskedDeoxy.nii \
S1004 HbR wrong noise /p2process/S1004/viewer/Subject/1004_cond6_unmaskedDeoxy.nii \
S1004 HbR right vocod p2process/S1004/viewer/Subject/1004_cond5_unmaskedDeoxy.nii \
S1004 HbR right noise /p2process/S1004/viewer/Subject/1004_cond4_unmaskedDeoxy.nii \
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Subject Author Posted

Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :

defenderfer August 31, 2018 11:01AM

Re: Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :

gang August 31, 2018 03:00PM

Re: Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :

defenderfer September 03, 2018 08:40AM

Re: Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :

gang September 04, 2018 10:30AM

Re: Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :

defenderfer September 04, 2018 01:24PM