Thanks for any help. I am using a mac and tcsh shell.
My MVM file is titled MVM1.txt file using the command: tcsh -x MVM1.txt &. I receive this message:
3dMVM -prefix Accuracy -jobs 4
Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :
argument is of length zero
Calls: process.MVM.opts
Execution halted
Everything else is followed by "Command not found." Ive checked my syntax, but I don't know what needs to be fixed. Here is my script; Ive only included 3 subjects for the example.
#!/bin/tcsh
3dMVM -prefix Accuracy -jobs 4 \
-model 1 \
-wsVars "oxy*acc*noiseType" \
-num_glt 3 \
-gltLabel 1 oxyEff -gltCode 1 'oxy : 1*HbO -1*HbR' \
-gltLabel 2 accEff -gltCode 2 'acc : 1*right -1*wrong' \
-gltLabel 3 noiseTypeEff -gltCode 3 'noiseType : 1*vocod -1*noise' \
-dataTable \
Subj oxy acc noiseType InputFile \
S1001 HbO wrong vocod /p2process/S1001/viewer/Subject/1001_cond7_unmaskedOxy.nii \
S1001 HbO wrong noise /p2process/S1001/viewer/Subject/1001_cond6_unmaskedOxy.nii \
S1001 HbO right vocod /p2process/S1001/viewer/Subject/1001_cond5_unmaskedOxy.nii \
S1001 HbO right noise /p2process/S1001/viewer/Subject/1001_cond4_unmaskedOxy.nii \
S1001 HbR wrong vocod /p2process/S1001/viewer/Subject/1001_cond7_unmaskedDeoxy.nii \
S1001 HbR wrong noise /p2process/S1001/viewer/Subject/1001_cond6_unmaskedDeoxy.nii \
S1001 HbR right vocod /p2process/S1001/viewer/Subject/1001_cond5_unmaskedDeoxy.nii \
S1001 HbR right noise /p2process/S1001/viewer/Subject/1001_cond4_unmaskedDeoxy.nii \
S1003 HbO wrong vocod /p2process/S1003/viewer/Subject/1003_cond7_unmaskedOxy.nii \
S1003 HbO wrong noise /p2process/S1003/viewer/Subject/1003_cond6_unmaskedOxy.nii \
S1003 HbO right vocod /p2process/S1003/viewer/Subject/1003_cond5_unmaskedOxy.nii \
S1003 HbO right noise /p2process/S1003/viewer/Subject/1003_cond4_unmaskedOxy.nii \
S1003 HbR wrong vocod /p2process/S1003/viewer/Subject/1003_cond7_unmaskedDeoxy.nii \
S1003 HbR wrong noise /p2process/S1003/viewer/Subject/1003_cond6_unmaskedDeoxy.nii \
S1003 HbR right vocod /p2process/S1003/viewer/Subject/1003_cond5_unmaskedDeoxy.nii \
S1003 HbR right noise /p2process/S1003/viewer/Subject/1003_cond4_unmaskedDeoxy.nii \
S1004 HbO wrong vocod /p2process/S1004/viewer/Subject/1004_cond7_unmaskedOxy.nii \
S1004 HbO wrong noise /p2process/S1004/viewer/Subject/1004_cond6_unmaskedOxy.nii \
S1004 HbO right vocod /p2process/S1004/viewer/Subject/1004_cond5_unmaskedOxy.nii \
S1004 HbO right noise /p2process/S1004/viewer/Subject/1004_cond4_unmaskedOxy.nii \
S1004 HbR wrong vocod /p2process/S1004/viewer/Subject/1004_cond7_unmaskedDeoxy.nii \
S1004 HbR wrong noise /p2process/S1004/viewer/Subject/1004_cond6_unmaskedDeoxy.nii \
S1004 HbR right vocod p2process/S1004/viewer/Subject/1004_cond5_unmaskedDeoxy.nii \
S1004 HbR right noise /p2process/S1004/viewer/Subject/1004_cond4_unmaskedDeoxy.nii \
