Hello --
The output of the suggested command is below:
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.4.0-53-generic
version: #74-Ubuntu SMP Fri Dec 2 15:59:10 UTC 2016
distribution: Ubuntu 16.04 xenial
number of CPUs: 32
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/mcuser/abin/afni
afni version : Precompiled binary linux_openmp_64: Nov 23 2016
AFNI_version.txt : AFNI_16.3.13, linux_openmp_64, Nov 23 2016
which python : /usr/bin/python
python version : 2.7.12
which R : /usr/bin/R
R version : R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/mcuser/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python2.7)
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib/python2.7/dist-packages/PyQt4
++ module loaded: PyQt4
-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/mcuser/abin:/usr/lib/fsl/5.0
PYTHONPATH =
R_LIBS = /home/mcuser/R
LD_LIBRARY_PATH = /usr/lib/fsl/5.0:/usr/local/lib/
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /home/mcuser/abin
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.2.15 (amd64)
have Ubuntu system: Ubuntu 16.04 xenial
============================ summary comments ============================
* login shell 'bash', trusting user to translate from 'tcsh'
* shell bash: consider sourcing (non-login) .bashrc from (login) .profile
* consider running: cp /home/mcuser/abin/AFNI.afnirc ~/.afnirc
* consider running "suma -update_env" for .sumarc
* insufficient data for AFNI bootcamp
