AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 09, 2017 11:11AM
Hi Steffie,

It seems freesurfer needs libgomp, but you seem to actually
have it installed. The last lines of afni_system_check.py
suggest what you could try:

First, watch mris_convert fail on its own (it should show the
help, but will presumably crash with that libgomp error here):

mris_convert

Then try to fix the problem:

sudo ln -s /usr/local/Cellar/gcc/6.3.0_1/lib/gcc/6/libgomp.1.dylib /usr/local/lib/libgomp.1.dylib

Then test that freesurfer program again:

mri_convert

Does that work?

- rick
Subject Author Posted

FreeSurfer to SUMA conversion error

Yulin Chang March 06, 2017 11:54AM

Re: FreeSurfer to SUMA conversion error

Peter Molfese March 06, 2017 01:38PM

Re: FreeSurfer to SUMA conversion error

blueberriesforsal March 09, 2017 10:37AM

Re: FreeSurfer to SUMA conversion error

ptaylor March 09, 2017 11:03AM

Re: FreeSurfer to SUMA conversion error

rick reynolds March 09, 2017 11:11AM

Re: FreeSurfer to SUMA conversion error

rick reynolds March 09, 2017 11:16AM

Re: FreeSurfer to SUMA conversion error

blueberriesforsal March 14, 2017 04:19PM

Re: FreeSurfer to SUMA conversion error

Matthew Hoptman August 03, 2017 11:06AM