AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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herrlich10
March 31, 2017 10:48PM
Thanks rick~

Actually, I use Dimon to read dicom files, though I know Dicom uses to3d internally to do the job.
Now I understand that the slice timing info must be either:
1) inferred somehow by Dimon and passed to to3d as tpattern
or
2) inferred by to3d itself if FROM_IMAGE is given as tpattern

Could you explain how does Dimon or to3d infer the tpattern from raw dicom files? Is it somewhere in the dicom header? Is the inference reliable?
BTW, we use Siemens scanner, if relevant.

Thank you.
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Subject Author Posted

How does to3d determine the slice order?

herrlich10 March 30, 2017 10:19PM

Re: How does to3d determine the slice order?

rick reynolds March 31, 2017 08:42AM

Re: How does to3d determine the slice order?

herrlich10 March 31, 2017 10:48PM

Re: How does to3d determine the slice order?

rick reynolds April 01, 2017 10:55AM