Hello,
I am interested in using whereami to generate anatomical masks in MNI space. Although the whereami -show_atlas_code indicates that the TT atlas has many regions from which I could generate a mask in tlrc space, I'm not seeing anything for the MNI_avg152T1 atlas I have using to co-localize subject structurals and activations. I also tried the 3dinfo command on this atlas.
I did whereami -show_atlas_code | less and see several other atlases with parcellations. Is it that there are several atlasas by different names in there that all rely on the spatial warping of MNI(152), but parcellate structures differently?
What should I do with the whereami -mask_atlas_region XX-xxx:yyyy etc? what atlas should I invoke?
Thanks
Jim