AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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jmbjork
June 09, 2017 05:10PM
Thanks Daniel,

I obtained the screen output that indicates the rough story on each atlas.

I was able to dump out amygdala masks for CA_ML_18_MNIA, however they looked too superior and lateral. Maybe it was just the sample subject's underlay...

However, what would be the syntax to use one of the CAxxx MNI-based atlases that do not have a left or right specifier?

I got an error when I entered either:

whereami -mask_atlas_region CA_N27_PM:u:Amyg:6 (too many colons) or

whereami -mask_atlas_region CA_N27_PM:u:Amyg or

whereami -mask_atlas_region CA_N27_PM:Amyg:6 or

Thanks

Jim
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Subject Author Posted

locate atlas datasets

dlhuynh April 06, 2017 07:32PM

Re: locate atlas datasets

Daniel Glen April 06, 2017 11:47PM

Re: locate atlas datasets

dlhuynh April 07, 2017 11:18AM

Re: locate atlas datasets

Daniel Glen April 09, 2017 12:50PM

Re: locate atlas datasets

jmbjork June 09, 2017 12:16PM

Re: locate atlas datasets

Daniel Glen June 09, 2017 02:12PM

Re: locate atlas datasets

jmbjork June 09, 2017 02:39PM

Re: locate atlas datasets

Daniel Glen June 09, 2017 03:59PM

Re: locate atlas datasets

jmbjork June 09, 2017 05:10PM

Re: locate atlas datasets

Daniel Glen June 11, 2017 10:14AM